List of PDB IDs of proteins used in training SDCPred.
Fifth letter is chain dentifier. All protein structures have been solved by X-ray crystallography at resolution better than 2.5A.
Fifth letter is chain dentifier. All protein structures have been solved by X-ray crystallography at resolution better than 2.5A.
| 1a35A | 1akhB | 1am9B | 1au7B | 1b3tA | 1b8iB |
| 1bdtC | 1bl0A | 1cktA | 1crxB | 1cw0A | 1d02B |
| 1d3uB | 1dc1A | 1dfmB | 1dizA | 1dnkA | 1emjA |
| 1eqzG | 1ewqA | 1eyuB | 1f2iG | 1f4kB | 1f6oA |
| 1fiuD | 1fjxA | 1gd2G | 1gxpB | 1h89C | 1h8aA |
| 1hcrA | 1hlvA | 1hwtH | 1iawB | 1ig7A | 1ignA |
| 1ihfA | 1ippA | 1j1vA | 1j3eA | 1j59A | 1je8B |
| 1jeyA | 1jeyB | 1jj4A | 1k61B | 1k78I | 1k79D |
| 1k82D | 1ku7A | 1kx5C | 1kx5D | 1kx5E | 1kx5F |
| 1l3lB | 1lliB | 1llmD | 1lq1D | 1m5rB | 1m5xB |
| 1mjqG | 1mnmB | 1mnmC | 1mowD | 1murA | 1n56B |
| 1n6jB | 1nfkB | 1nlwB | 1nlwD | 1oe5A | 1orpA |
| 1oupA | 1ozjA | 1p47A | 1pueF | 1pufA | 1pufB |
| 1qaiB | 1qbjB | 1qn7B | 1qrvA | 1qssA | 1qumA |
| 1r7mB | 1rh6B | 1rm1C | 1rrjA | 1rrqA | 1rxwA |
| 1sa3B | 1sfuB | 1skrA | 1stxA | 1t2tA | 1tc3C |
| 1tezB | 1trrG | 1u8bA | 1ubdC | 1uutB | 1v15D |
| 1w0uA | 1wbdA | 1wd1A | 1wteA | 1xbrB | 1xhvB |
| 1ya6A | 1yqmA | 1yrnA | 1zetA | 1zmeD | 1zs4C |
| 2a07J | 2a66A | 2ahiA | 2aoqA | 2aq4A | 2b9sB |
| 2bcqA | 2bnwA | 2c6yA | 2cv5A | 2cv5C | 2cv5D |
| 2d5vB | 2dp6A | 2dtuC | 2eviA | 2ex5A | 2ezvA |
| 2fccB | 2fkcB | 2g1pA | 2ge5A | 2h27D | 2h7hB |
| 2heoD | 2i06A | 2i13B | 2i3pB | 2iieA | 2irfJ |
| 2is6B | 2iszB | 2jg3D | 2nllB | 2ntcB | 2o4aA |
| 2oaaA | 2ofiA | 2owoA | 2p0jB | 2pi4A | 2q10A |
| 3bamA | 4bdpA | 6paxA |
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Citation
When using this webserver please cite:
Andrabi M, Mizuguchi K, Sarai A, Ahmad S: Prediction of mono- and di- nucleotide specific DNA-binding sites in proteins using neural networks . BMC Structural biology,2009,9:30. PDF