This web server predicts the RNA dinucleotide contacts in protein using evolutionary information in the form of PSSM using Neural Networks. The input is an amino acid sequence in the fasta format.

Enter your sequence below in plain text (FASTA format)

Test Sequence

Copy and paste the sequence in the text box above and press the predict button to see an example of prediction using evolutionary infomation (PSSM)

MGRGKVKPNRKSTGDNSNVVTMIRAGSYPKVNPTPTWVRA IPFEVSVQSGIAFKVPVGSLFSANFRTDSFTSVTVMSVRA WTQLTPPVNEYSFVRLKPLFKTGDSTEEFEGRASNINTRA SVGYRIPTNLRQNTVAADNVCEVRSNCRQVALVISCCFN

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(Some links are under construction)

• • Introduction
  • Sample Output
  • Server Performance
  • Dataset

Citation

Prediction of dinucleotide-specific RNA-binding sites in proteins M Fernandez, Y Kumagai, D Standley, A Sarai, K Mizuguchi, S Ahmad BMC bioinformatics 12 (Suppl 13), S5 (2011)

Contact:
Shandar Ahmad
shandar@nibio.go.jp